PhytophthoraV1, Main, Exploration, bibRecord, 000732

Large sub-clonal variation in Phytophthora infestans from recent severe late blight epidemics in India.

Identifieur interne : 000732 ( Main/Exploration ); précédent : 000731; suivant : 000733

Large sub-clonal variation in Phytophthora infestans from recent severe late blight epidemics in India.

Auteurs : Tanmoy Dey [Inde] ; Amanda Saville [États-Unis] ; Kevin Myers [États-Unis] ; Susanta Tewari [Inde] ; David E L. Cooke [Royaume-Uni] ; Sucheta Tripathy [Inde] ; William E. Fry [États-Unis] ; Jean B. Ristaino [États-Unis] ; Sanjoy Guha Roy [Inde]

Source :

Scientific reports [ 2045-2322 ] ; 2018.

RBID : pubmed:29535313

Descripteurs français

KwdFr :
- Analyse de séquence d'ADN (méthodes), Europe (MeSH), Inde (MeSH), Maladies des plantes (parasitologie), Phylogenèse (MeSH), Phylogéographie (MeSH), Phytophthora infestans (classification), Phytophthora infestans (génétique), Phytophthora infestans (pathogénicité), Royaume-Uni (MeSH), Solanum tuberosum (parasitologie), Typage par séquençage multilocus (méthodes), Épidémies (MeSH), Évolution moléculaire (MeSH).
MESH :
- génétique : Phytophthora infestans.
- méthodes : Analyse de séquence d'ADN, Typage par séquençage multilocus.
- parasitologie : Maladies des plantes, Solanum tuberosum.
- pathogénicité : Phytophthora infestans.
- Europe, Inde, Phylogenèse, Phylogéographie, Phytophthora infestans, Royaume-Uni, Épidémies, Évolution moléculaire.
Wicri :
- geographic : Inde, Royaume-Uni.

English descriptors

KwdEn :
- Epidemics (MeSH), Europe (MeSH), Evolution, Molecular (MeSH), India (MeSH), Multilocus Sequence Typing (methods), Phylogeny (MeSH), Phylogeography (MeSH), Phytophthora infestans (classification), Phytophthora infestans (genetics), Phytophthora infestans (pathogenicity), Plant Diseases (parasitology), Sequence Analysis, DNA (methods), Solanum tuberosum (parasitology), United Kingdom (MeSH).
MESH :
- geographic : Europe, India, United Kingdom.
- classification : Phytophthora infestans.
- genetics : Phytophthora infestans.
- methods : Multilocus Sequence Typing, Sequence Analysis, DNA.
- parasitology : Plant Diseases, Solanum tuberosum.
- pathogenicity : Phytophthora infestans.
- Epidemics, Evolution, Molecular, Phylogeny, Phylogeography.

Abstract

The population structure of the Phytophthora infestans populations that caused the recent 2013-14 late blight epidemic in eastern India (EI) and northeastern India (NEI) was examined. The data provide new baseline information for populations of P. infestans in India. A migrant European 13_A2 genotype was responsible for the 2013-14 epidemic, replacing the existing populations. Mutations have generated substantial sub-clonal variation with 24 multi-locus genotypes (MLGs) found, of which 19 were unique variants not yet reported elsewhere globally. Samples from West Bengal were the most diverse and grouped alongside MLGs found in Europe, the UK and from neighbouring Bangladesh but were not linked directly to most samples from south India. The pathogen population was broadly more aggressive on potato than on tomato and resistant to the fungicide metalaxyl. Pathogen population diversity was higher in regions around the international borders with Bangladesh and Nepal. Overall, the multiple shared MLGs suggested genetic contributions from UK and Europe in addition to a sub-structure based on the geographical location within India. Our data indicate the need for improved phytosanitary procedures and continuous surveillance to prevent the further introduction of aggressive lineages of P. infestans into the country.

DOI: 10.1038/s41598-018-22192-1
PubMed: 29535313
PubMed Central: PMC5849725

Affiliations:

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<term>Europe (MeSH)</term>
<term>Evolution, Molecular (MeSH)</term>
<term>India (MeSH)</term>
<term>Multilocus Sequence Typing (methods)</term>
<term>Phylogeny (MeSH)</term>
<term>Phylogeography (MeSH)</term>
<term>Phytophthora infestans (classification)</term>
<term>Phytophthora infestans (genetics)</term>
<term>Phytophthora infestans (pathogenicity)</term>
<term>Plant Diseases (parasitology)</term>
<term>Sequence Analysis, DNA (methods)</term>
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<term>Inde (MeSH)</term>
<term>Maladies des plantes (parasitologie)</term>
<term>Phylogenèse (MeSH)</term>
<term>Phylogéographie (MeSH)</term>
<term>Phytophthora infestans (classification)</term>
<term>Phytophthora infestans (génétique)</term>
<term>Phytophthora infestans (pathogénicité)</term>
<term>Royaume-Uni (MeSH)</term>
<term>Solanum tuberosum (parasitologie)</term>
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<front><div type="abstract" xml:lang="en">The population structure of the Phytophthora infestans populations that caused the recent 2013-14 late blight epidemic in eastern India (EI) and northeastern India (NEI) was examined. The data provide new baseline information for populations of P. infestans in India. A migrant European 13_A2 genotype was responsible for the 2013-14 epidemic, replacing the existing populations. Mutations have generated substantial sub-clonal variation with 24 multi-locus genotypes (MLGs) found, of which 19 were unique variants not yet reported elsewhere globally. Samples from West Bengal were the most diverse and grouped alongside MLGs found in Europe, the UK and from neighbouring Bangladesh but were not linked directly to most samples from south India. The pathogen population was broadly more aggressive on potato than on tomato and resistant to the fungicide metalaxyl. Pathogen population diversity was higher in regions around the international borders with Bangladesh and Nepal. Overall, the multiple shared MLGs suggested genetic contributions from UK and Europe in addition to a sub-structure based on the geographical location within India. Our data indicate the need for improved phytosanitary procedures and continuous surveillance to prevent the further introduction of aggressive lineages of P. infestans into the country.</div>
</front>
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<Abstract><AbstractText>The population structure of the Phytophthora infestans populations that caused the recent 2013-14 late blight epidemic in eastern India (EI) and northeastern India (NEI) was examined. The data provide new baseline information for populations of P. infestans in India. A migrant European 13_A2 genotype was responsible for the 2013-14 epidemic, replacing the existing populations. Mutations have generated substantial sub-clonal variation with 24 multi-locus genotypes (MLGs) found, of which 19 were unique variants not yet reported elsewhere globally. Samples from West Bengal were the most diverse and grouped alongside MLGs found in Europe, the UK and from neighbouring Bangladesh but were not linked directly to most samples from south India. The pathogen population was broadly more aggressive on potato than on tomato and resistant to the fungicide metalaxyl. Pathogen population diversity was higher in regions around the international borders with Bangladesh and Nepal. Overall, the multiple shared MLGs suggested genetic contributions from UK and Europe in addition to a sub-structure based on the geographical location within India. Our data indicate the need for improved phytosanitary procedures and continuous surveillance to prevent the further introduction of aggressive lineages of P. infestans into the country.</AbstractText>
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<Initials>T</Initials>
<AffiliationInfo><Affiliation>Department of Botany, West Bengal State University, Kolkata, 700126, India.</Affiliation>
</AffiliationInfo>
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<ForeName>Amanda</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, North Carolina, Raleigh, NC, 27607, USA.</Affiliation>
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<ForeName>Kevin</ForeName>
<Initials>K</Initials>
<AffiliationInfo><Affiliation>Plant Pathology and Plant-Microbe Biology, Cornell University, Ithaca, NY14850, USA.</Affiliation>
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<Author ValidYN="Y"><LastName>Tewari</LastName>
<ForeName>Susanta</ForeName>
<Initials>S</Initials>
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</AffiliationInfo>
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<ForeName>David E L</ForeName>
<Initials>DEL</Initials>
<AffiliationInfo><Affiliation>James Hutton Institute, Dundee, DD2 5DA, UK.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Tripathy</LastName>
<ForeName>Sucheta</ForeName>
<Initials>S</Initials>
<Identifier Source="ORCID">0000-0003-0611-8088</Identifier>
<AffiliationInfo><Affiliation>Indian Institute of Chemical Biology, Kolkata, 700032, India.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Academy of Scientific and Innovative Research, Ghaziabad, Delhi, India.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Fry</LastName>
<ForeName>William E</ForeName>
<Initials>WE</Initials>
<AffiliationInfo><Affiliation>Plant Pathology and Plant-Microbe Biology, Cornell University, Ithaca, NY14850, USA.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Ristaino</LastName>
<ForeName>Jean B</ForeName>
<Initials>JB</Initials>
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<Author ValidYN="Y"><LastName>Guha Roy</LastName>
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Large sub-clonal variation in Phytophthora infestans from recent severe late blight epidemics in India.

Large sub-clonal variation in Phytophthora infestans from recent severe late blight epidemics in India.

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